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iNephron - The reproducible virtual nephron
===========================================

iNephron is a collection of software tools and computational models being developed at the Auckland Bioengineering Institute based on the concept of reproducible modelling of generalised epithelial transport in the context of the nephron. iNephron makes extensive use of `CellML <https://cellml.org>`_ and `SED-ML <https://sed-ml.org>`_, and so our tools include some generic software for working with these standards which are included here. Demonstrations of the ideas and tools being promoted by the iNephron project are also listed below.

Contents:

.. toctree::
   :maxdepth: 1
   :titlesonly:

   introduction
   csim/index
   PhysiomeModeller/index
   glossary

.. toctree::
   :hidden:
   
   todo
   README
   


.. Indices and tables
.. ==================
.. 
.. * :ref:`todo`
.. * :ref:`genindex`
.. * :ref:`modindex`
.. * :ref:`search`